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Category : Chemistry

Automated Sequencing of the psaB Gene Using LI-COR 4200 DNA Analyzer

Written by Erin Downey INTRODUCTION             A section of cloned DNA can be sequenced by a variety of methods, the most common of which is the Sanger method. The Sanger method uses low concentrations of dideoxynucleoside triphosphates (ddNTPs) to act as chain terminators. These are used with the normal, unmodified deoxynucleoside triphosphates. Terminators are separated into ddATP, ddTTPs, ddCTPs, and ddGTPs samples so that when they are sequenced, each lane identifies the terminal nucleotide. This results in fragments of varying […]

pGLO and Mutagenesis

Written by: Nathan Sheppard Abstract             Plasmids are pieces of circular DNA that are in bacteria which can code for genes that can cause the bacteria to have extra “features”. With the pGLO plasmid this extra “feature” causes bacteria to glow (from the Green Fluorescent Protein that was inserted) and also has resistance to ampicillin (from the beta-lactamase protein). By adding the pGLO plasmid the E.coli bacteria will be able to grow on agar with arabinose sugar and ampicillin. The […]

Determination of lac Operon Functionality of Two Strains of E. coli by Comparing β-galactosidase Activity

By Christopher Cronkite: Abstract             Operons are regions of prokaryotic DNA that contain multiple genes without an interfering termination sequence. Because of this, the genes in an operon are all transcribed into a single mRNA. In this way, a cell can regulate transcription of multiple, related genes using the same mechanisms. In Escherichia coli, the lac operon codes for three proteins involved in lactose catabolism. Expression of this operon is regulated by both a repressor and enhancer that function dependent […]

Nucleophilic addition of propane to p-tolualdehyde through the Grignard reaction

Written by Jacob Barlow Purpose: The purpose of this experiment is to synthesize a Grignard reagent (Grignard Reaction) from 2-bromopropane which is then used to synthesize 2-methyl-1-(4-methylphenyl)propan-1-ol from p-tolualdehyde and the created Grignard reagent.  The product was then purified using liquid-liquid extraction and rotary evaporation.  It was then identified using infrared and nuclear magnetic resonance spectroscopy. Chemical Equation: This is the chemical equation for the creation of the Grignard reagent. This is the chemical equation of the reaction of the […]

Reduction of Methylene Blue

Written by Allison Guindon The rate constant of the reduction of methylene blue was determined by spectroscopy. The experimental koverall was determined to be 9.4±4.2L2/mol2/s at 295.15K. The experimental value was compared to the known value of 5.0L2/mol2/s resulting in a percent error of 88%. Sources of error include, not mixing the solutions and placing them into the spectrometer fast enough, or fingerprints on the cuvette. BACKGROUND: Reaction rate constants (k) measure the speed of chemical reactions. Reaction rates depend […]

Synthesis of Ethanol by Simple and Fractional Distillation

Written by Aarti Prabhu Objective: To purify and concentrate a fermentation mixture by both simple and fractional distillation Procedure Observations 1.) Add 5 g of Celite to the fermentation mixture, mix thoroughly, and then vacuum filter into a large filter flask. Material had settled in the r.b. Flask, but dissolved again when mixed with the Celite. The mixture had a brownish white tint. After filtering, the solution looked yellow and smelt like alcohol. 2.) Transfer the filtered solution back to […]